Applications of Time-lapse Imagery for Monitoring and Illustrating Ecological Dynamics in a Water-stressed System

Understanding and perceiving the natural world is a key part of management, policy, conservation, and inevitably for our future. Increased demand on natural resources has heightened the importance of documenting ecosystem changes, and knowledge-sharing to foster awareness. The advancement of digital technologies has improved the efficiency of passive monitoring, connectivity among systems, and expanded the potential for innovative and communicative approaches. From technological progression, time-lapse imagery has emerged a valuable tool to capture and depict natural systems. I sought to enhance our understanding of a water-stressed system by analyzing imagery, in addition to integrating images with data visualization to illustrate the complexity of a river basin in central Nebraska. Image analysis was used to quantify wetland water inundation and vegetation phenology. These measurements from visible changes were combined with less visible data from additional passive monitoring to examine the relationship between vegetation phenology and bat activity, as well as wetland inundation and water quality. Moreover, time-lapse data sequences were constructed by integrating time-lapse imagery with data visualization in an interactive digital framework to examine the applications for communicating social-ecological dynamics. Findings suggest vegetation phenology was differentially associated with seasonal bat activity, possibly related to migratory versus resident life history strategies. In regards to examining wetland hydrology, water inundation was found to be correlated with nitrate, dissolved oxygen, and DEA, and negatively correlated with water temperature, indicating the importance of understanding water levels. AEM-RDA analysis identified several significant temporal patterns occurring with the wetland as well as the river site. Similarities between river and wetland patterns were suggestive of regional conditions driving fluctuations, while discrepancies were indicative of structural, biological, and local differences within individual sites. In examining communicative applications, time-lapse data sequences depicted a range of ecological dynamics while linking visible and invisible occurrences. The framework shows potential to offer a tangible context with explanatory content to aid in understanding environmental changes that are often too subtle to see or beyond the temporal scale of unaided human observation. Overall, cumulative findings suggest time-lapse imagery is of dual utility and has high potential for collecting data and illustrating ecological dynamics. Advisor: Craig R. Alle

Applications of Time-lapse Imagery for Monitoring and Illustrating Ecological Dynamics in a Water-stressed System

Understanding and perceiving the natural world is a key part of management, policy, conservation, and inevitably for our future. Increased demand on natural resources has heightened the importance of documenting ecosystem changes, and knowledge-sharing to foster awareness. The advancement of digital technologies has improved the efficiency of passive monitoring, connectivity among systems, and expanded the potential for innovative and communicative approaches. From technological progression, time-lapse imagery has emerged a valuable tool to capture and depict natural systems. I sought to enhance our understanding of a water-stressed system by analyzing imagery, in addition to integrating images with data visualization to illustrate the complexity of a river basin in central Nebraska. Image analysis was used to quantify wetland water inundation and vegetation phenology. These measurements from visible changes were combined with less visible data from additional passive monitoring to examine the relationship between vegetation phenology and bat activity, as well as wetland inundation and water quality. Moreover, time-lapse data sequences were constructed by integrating time-lapse imagery with data visualization in an interactive digital framework to examine the applications for communicating social-ecological dynamics. Findings suggest vegetation phenology was differentially associated with seasonal bat activity, possibly related to migratory versus resident life history strategies. In regards to examining wetland hydrology, water inundation was found to be correlated with nitrate, dissolved oxygen, and DEA, and negatively correlated with water temperature, indicating the importance of understanding water levels. AEM-RDA analysis identified several significant temporal patterns occurring with the wetland as well as the river site. Similarities between river and wetland patterns were suggestive of regional conditions driving fluctuations, while discrepancies were indicative of structural, biological, and local differences within individual sites. In examining communicative applications, time-lapse data sequences depicted a range of ecological dynamics while linking visible and invisible occurrences. The framework shows potential to offer a tangible context with explanatory content to aid in understanding environmental changes that are often too subtle to see or beyond the temporal scale of unaided human observation. Overall, cumulative findings suggest time-lapse imagery is of dual utility and has high potential for collecting data and illustrating ecological dynamics. Advisor: Craig R. Alle

Spatial analysis of borrow pits along the Platte River in south-central Nebraska, USA, in 1957 and 2016

The Central Platte River Valley (CPRV) of Nebraska provides critical habitat for wildlife, while serving agricultural, indus­trial, and other human uses. Mining of sand and gravel from the floodplain of the Platte River has supported construction of roads and other uses, and this extraction has created many borrow-pit ponds, lakes, and other small bodies of standing water (hereafter borrow-pits), further transforming riparian and prairie habitats. The objective of this study was to compare the abundance, size, and distribution of borrow pits before construction of Interstate 80 (1957) and at present (2016) from Lexington to Chapman, Nebraska, a length of river spanning about 146 km (90 mi) and sometimes referred to as the Big Bend Reach. Orthorectified aerial imagery of the Platte River was obtained for years 1957 and 2016, and we digitized the standing bodies of water within the floodplain in Arc­GIS. Total numbers of borrow pits and measures of pit shape were calculated and compared between floodplain regions where im­agery overlapped. From 1957 to 2016, the number of borrow pits increased from 300 to 786, total area occupied by pits expanded by 538%, and total shoreline of pits increased by 261%. In 2016, aerial imagery was available for a larger extent of the floodplain and contained a total of 1,062 borrow pits covering 16 km2 (6 mi2), with a total shoreline of 581 km (361 mi). For context, the Platte River channels’ approximate area was 45 km2 (17 mi2) and shoreline 1,582 km (983 mi) between Lexington and Chapman, Nebraska, in 2016. Results provide insight into historical and current presence, distribution, and shape of borrow pits along the Platte River, as well as serve as a reference point for future studies investigating regional landscape change and ecological effects of creating hun­dreds of borrow pits on the floodplain

Whooping Crane (Grus americana) family consumes a diversity of aquatic vertebrates during fall migration stopover at the Platte River, Nebraska

The Aransas-Wood Buffalo population of Whooping Cranes (Grus americana) migrates approximately 4000 km through the central Great Plains biannually, between their breeding and wintering grounds. Whooping Cranes depend on stopover sites to provide secure resting locations and the caloric resources necessary to complete their migration, such as the USFWS-designated critical habitat area in the Central Platte River Valley (CPRV) of Nebraska. This area includes braided river habitat characterized by low-elevation and submerged sandbars, which provide important roosting and foraging opportunities for migrating Whooping Cranes. We used long-range photography, videography, and behavioral scan sampling to document forage items consumed by Whooping Cranes during an 11-day stopover in this area during the fall of 2019. We identified 3 adult-plumage Whooping Cranes and 1 colt consuming 16 individual vertebrates of at least 6 different species during the stopover. In total, we documented Whooping Cranes consuming 7 Channel Catfish (Ictalurus punctatus), 5 ray-finned fish (Actinopterygii), 1 sunfish (Centrarchidae), 1 carp/minnow relative (Cypriniformes), 1 perch relative (Percidae), and 1 Leopard Frog relative (Lithobates sp.). We estimated prey item lengths using the average exposed culmen measurements for adult Whooping Cranes and approximated their nutritional value using log-transformed length–weight regression equations with taxon-specific intercepts and slopes from secondary data sources. We estimated that aquatic vertebrate forage made up a significant portion of Whooping Crane daily energy requirements and provided substantial amounts of calcium, phosphorus, and protein not present at high levels in waste grains also consumed during migration. Additionally, we documented territorial behavior by adult Whooping Cranes during migration and evidence of adults teaching their colt to forage. Our study demonstrates the utility of photography and videography to natural history research and indicates that aquatic vertebrates may be a relatively regular part of Whooping Crane diet in the CPRV. RESUMEN.—La población de grullas trompeteras (Grus americana) de Aransas-Wood Buffalo migra aproximadamente 4000 km dos veces al año a través de las Grandes Llanuras (Great Plains) centrales, entre sus sitios de reproducción y sus sitios de invernada. Las grullas trompeteras dependen de los sitios donde hacen escalas para obtener lugares de descanso y adquirir los recursos calóricos necesarios para completar su migración, tales como, el área de hábitat crítico designada por USFWS en Central Platte River Valley (CPRV) de Nebraska. Esta área cuenta con un hábitat fluvial trenzado caracterizado por bancos de arena sumergidos de baja elevación que constituyen importantes zonas de descanso y alimentación para las grullas trompeteras migratorias. En el otoño de 2019, durante una escala de 11 días, registramos los alimentos consumidos en el área por las grullas trompeteras, utilizando fotografías y videos de largo alcance y análisis conductuales. Identificamos tres grullas trompeteras adultas y una joven consumiendo 16 vertebrados de al menos seis especies diferentes. En total, registramos grullas trompeteras consumiendo siete peces gato americanos (Ictalurus punctatus), cinco peces con aletas radiadas (Actinopterygii), un pez luna (Centrarchidae), un pariente del pez carpa/piscardo (Cypriniformes), un pariente de la perca (Percidae) y un pariente de la rana leopardo (Lithobates sp.). Calculamos la longitud de las presas usando el promedio del tamaño de culmen de las grullas trompeteras adultas, y estimamos el valor nutricional con ecuaciones de regresión de talla-peso transformadas logarítmicamente con intersecciones y pendientes de taxones específicos provenientes de una fuente de datos secundarios. Estimamos que el consumo de vertebrados acuáticos proporciona una parte significativa de las necesidades energéticas diarias de la grulla trompetera, y grandes cantidades de calcio, fósforo y proteínas que no están presentes en altos niveles, en los granos de desecho, que también se consumen durante la migración. Además, documentamos el comportamiento territorial de las grullas trompeteras adultas durante la migración, así como la evidencia de adultos enseñando a sus crías a alimentarse. Nuestro estudio demuestra la utilidad de la fotografía y videografía en la investigación de la historia natural e indica que los vertebrados acuáticos pueden ser parte de la dieta regular de la grulla trompetera en el CPRV

Animation by Computer. a Tool for Understanding the Dynamical Behaviour of Ancient Machines

The datasets in this article are associated with the research article \u27Assessing biological and environmental effects of a total solar eclipse with passive multimodal technologies\u27 (Brinley Buckley et al., 2018). We documented biotic and abiotic changed during a total solar eclipse on 21 August 2017, in south-central Nebraska, USA, with a multimodel suite of tools, including time-lapse camera systems, data loggers, and sound recording devices. Time-lapse images were used to approximate changes in light, data loggers were used to record temperature and humidity, and sound recordings were used to calculate acoustic indices characterizing variation in the soundscape, as well as to manually identify and estimate avian vocalization activity

WHOOPING CRANE STAY LENGTH IN RELATION TO STOPOVER SITE CHARACTERISTICS

Whooping crane (Grus americana) migratory stopovers can vary in length from hours to more than a month. Stopover sites provide food resources and safety essential for the completion of migration. Factors such as weather, climate, demographics of migrating groups, and physiological condition of migrants influence migratory movements of cranes (Gruidae) to varying degrees. However, little research has examined the relationship between habitat characteristics and stopover stay length in cranes. Site quality may relate to stay length with longer stays that allow individuals to improve body condition, or with shorter stays because of increased foraging efficiency. We examined this question by using habitat data collected at 605 use locations from 449 stopover sites throughout the United States Great Plains visited by 58 whooping cranes from the Aransas–Wood Buffalo Population tracked with platform transmitting terminals. Research staff compiled land cover (e.g., hectares of corn; landscape level) and habitat metric (e.g., maximum water depth; site level) data for day use and evening roost locations via site visits and geospatial mapping. We used Random Forest regression analyses to estimate importance of covariates for predicting stopover stay length. Site-level variables explained 9% of variation in stay length, whereas landscape-level variables explained 43%. Stay length increased with latitude and the proportion of land cover as open-water slough with emergent vegetation as well as alfalfa, whereas stay length decreased as open-water lacustrine wetland land cover increased. At the site level, stopover duration increased with wetted width at riverine sites but decreased with wetted width at palustrine and lacustrine wetland sites. Stopover duration increased with mean distance to visual obstruction as well as where management had reduced the height of vegetation through natural (e.g., grazing) or mechanical (e.g., harvesting) means and decreased with maximum water depth. Our results suggest that stopover length increases with the availability of preferred land cover types for foraging. High quality stopover sites with abundant forage resources may help whooping cranes maintain fat reserves important to their annual life cycle

Temporospatial shifts in Sandhill Crane staging in the Central Platte River Valley in response to climatic variation and habitat change

Over 80% of the Mid-Continent Sandhill Crane (Antigone canadensis) Population (MCP), estimated at over 660,000 individuals, stops in the Central Platte River Valley (CPRV) during spring migration from mid-February through mid-April. Research suggests that the MCP may be shifting its distribution spatially and temporally within the CPRV. From 2002 to 2017, we conducted weekly aerial surveys of Sandhill Cranes staging in the CPRV to examine temporal and spatial trends in their abundance and distribution. Then, we used winter temperature and drought severity measures from key wintering and early migratory stopover locations to assess the impacts of weather patterns on annual migration chronology in the CPRV. We also evaluated channel width and land cover characteristics using aerial imagery from 1938, 1998, and 2016 to assess the relationship between habitat change and the spatial distribution of the MCP in the CPRV. We used generalized linear models, cumulative link models, and Akaike’s information criterion corrected for small sample sizes (AICc) to compare temporal and spatial models. Temperatures and drought conditions at wintering and migration locations that are heavily used by Greater Sandhill Cranes (A. c. tabida) best predicted migration chronology of the MCP to the CPRV. The spatial distribution of roosting Sandhill Cranes from 2015 to 2017 was best predicted by the proportion of width reduction in the main channel since 1938 (rather than its width in 2016) and the proportion of land cover as prairie-meadow habitat within 800 m of the Platte River. Our data suggest that Sandhill Cranes advanced their migration by an average of just over 1 day per year from 2002 to 2017, and that they continued to shift eastward, concentrating at eastern reaches of the CPRV. Climate change, land use change, and habitat loss have all likely contributed to Sandhill Cranes coming earlier and staying longer in fewer reaches of the CPRV, increasing their site use intensity. These historically unprecedented densities may present a disease risk to Sandhill Cranes and other waterbirds, including Whooping Cranes (Grus americana). Our models suggest that conservation actions may be maintaining Sandhill Crane densities in areas that would otherwise be declining in use. We suggest that management actions intended to mitigate trends in the distribution of Sandhill Cranes, including wet meadow restoration, may similarly benefit prairie- and braided river–endemic species of concern. Más del 80% de la población de grullas canadienses (Antigone canadensis), de la zona central del continente (MCP por sus siglas en inglés), estimada en más de 660,000, descansa en el valle central del Río Platte (CPRV por sus siglas en inglés) durante su migración de primavera, desde mediados de febrero hasta mediados de abril. Diversos estudios indican que su distribución espacial y temporal podría estar cambiando dentro del CPRV. Desde el año 2002 hasta el 2017 realizamos sondeos aéreos semanales de grullas canadienses en el CPRV para estudiar las tendencias temporales y espaciales relacionadas a su abundancia y distribución. Usamos mediciones de temperatura durante el invierno y de la severidad de la sequía de lugares claves de invernada y de sitios de descanso durante su migración temprana para evaluar el impacto de los patrones climáticos en la cronología migratoria anual del CPRV. También analizamos la amplitud del canal y las características de la cubierta terrestre usando imágenes aéreas de 1938, 1998 y 2016 con el fin de evaluar la relación entre el cambio de hábitat y la distribución espacial de la MCP en el CPRV. Utilizamos modelos lineales generalizados, modelos de enlace acumulativo y el criterio de información de Akaike adecuados a muestras pequeñas (AICc), para comparar modelos temporales y espaciales. Las condiciones climáticas y de sequía en los sitios de invernada y migración más usados por la grulla canadiense mayor (A. c. tabida) predijeron mejor la cronología migratoria de la MCP en el CPRV. La reducción de la amplitud del canal principal desde 1938, junto con el porcentaje de cubierta terrestre como hábitat de pradera dentro de los 800 m del río Platte, fue el mejor predictor de la distribución espacial de la grulla canadiense desde el año 2015 hasta el 2017. Nuestros estudios indican que las grullas canadienses adelantaron su migración en un promedio poco más de un día por año entre el 2002 y el 2017 y que continuaron desplazándose hacia el este, concentrándose en los extremos orientales del CPRV. El cambio climático, el cambio de uso del suelo y la pérdida del hábitat probablemente contribuyeron a la migración temprana de esta especie y a su permanencia más prolongada en algunos sectores del CPRV, aumentando la intensidad del uso del sitio. Estas densidades sin precedentes podrían presentar un riesgo de enfermedad para la grulla canadiense y otras aves acuáticas, incluidas las grullas trompeteras (Grus americana). Nuestros modelos indican que las medidas actuales de conservación podrían ser la causa de preservación de la densidad poblacional de la grulla canadiense en áreas en las que, de otra forma, su presencia estaría disminuyendo. Sugerimos que las medidas de control destinadas a mitigar la tendencia de distribución de la grulla canadiense, incluyendo la restauración de los prados húmedos, pueden beneficiar de igual manera a las especies endémicas, praderas y ríos trenzados de nuestro interés

Greater Sandhill Crane (\u3ci\u3eAntigone canadensis tabida\u3c/i\u3e) Copulation Detected Along the Big Bend of the Platte River, South-Central Nebraska

On 9 March 2017 at 0805 hrs, two A. canadensis tabida were observed copulating on a sandy island within the south channel of the Platte River, Hall County, Nebraska (40.790982°N, -98.404635°W, WGS84; 581 m elev.). Two biologists witnessed the copulation at a distance of about 175 m looking to the south from within an overnight viewing blind on the north bank of the south channel of the Platte River, utilizing an 80 mm spotting scope (20x60x magnification). The sequence of events previous to the copulation followed very closely the observations reported by Tacha (1988). The copulation was proceeded by the male holding the “bill up” display pointing its neck and bill in a straight line at approximately 45° to the body (Tacha 1988). The male initiated this behavior and held it longer, but the female also completed a “bill up” display previous to copulation. The male then paced around the female, she flattened her back and opened her wings partially, providing a spot for the male to land on top of her and place his feet atop her scapulars. Following this, the pair made a series of cloacal contacts with mounting lasting approximately 8 to 10 seconds

A descriptive analysis of Regal Fritillary (\u3ci\u3eSpeyeria idalia\u3c/i\u3e) habitat utilizing biological monitoring data along the big bend of the Platte River, NE

Speyeria idalia populations have declined as much as 95 percent over the last three decades. Here we critically evaluate prairie habitat components along the Platte River in central Nebraska that S. idalia populations require in an effort to better inform conservation efforts. We utilized S. idalia count data from biological monitoring transects where vegetation, soils, land management, and flooding frequency data were also collected to describe the habitat constituents associated with S. idalia presence. We utilize comparative statistics, Pearson’s correlation analysis, and random forest analysis to model S. idalia habitat on land owned and managed by a small conservation NGO. Our findings suggest that S. idalia occupies specific habitat niches with a preference for well-drained soils (Inavale series) dominated by facultative upland plants, most prominently Andropogon gerardii. S. idalia is positively associated with large connected tracts of relict prairie containing Viola sororia and very moderate management regimes that remove shrubby cover (negatively associated) and promote forb cover (positively associated), while providing ample recovery time on burned and grazed patches for litter development (positively associated). Random forest analysis describes the presence of V. sororia, percent forb cover, and habitat isolation as the top three habitat variables of importance in predicting the presence/absence of S. idalia. Our finding that habitat isolation is a major predictor of S. idalia absence suggests many populations may be both spatially and genetically isolated. S. idalia’s future demands the preservation of tallgrass prairie fragments under management regimes that promote healthy populations and habitat connectivity

Capturing change: the duality of time-lapse imagery to acquire data and depict ecological dynamics

We investigate the scientific and communicative value of time-lapse imagery by exploring applications for data collection and visualization. Time-lapse imagery has a myriad of possible applications to study and depict ecosystems and can operate at unique temporal and spatial scales to bridge the gap between large-scale satellite imagery projects and observational field research. Time-lapse data sequences, linking time-lapse imagery with data visualization, have the ability to make data come alive for a wider audience by connecting abstract numbers to images that root data in time and place. Utilizing imagery from the Platte Basin Timelapse Project, water inundation and vegetation phenology metrics are quantified via image analysis and then paired with passive monitoring data, including streamflow and water chemistry. Dynamic and interactive time-lapse data sequences elucidate the visible and invisible ecological dynamics of a significantly altered yet internationally important river system in central Nebraska